spateo.segmentation.simulation_evaluation

Submodules

• spateo.segmentation.simulation_evaluation.allocate_cell
• spateo.segmentation.simulation_evaluation.evaluation
• spateo.segmentation.simulation_evaluation.prepare

Package Contents

Functions

add_sig_to_cell(labels, cell_mean_df, bg_mean_df, seed)
get_cell_pos(area_df, ltos[, cell_num, height, width, ...])
simulate_cell_and_sig(area_df, ltos, cell_sig_df, ...)
cal_ami(a1, a2)
cal_f1score(a1, a2[, binary])
cal_precision(a1, a2[, tau])
c_to_a_ratio_dis(labels_tif)
cell_area_dis(labels_tifs)
get_fb_dis(image_tif, labels_tif)
get_fb_dis_window(image_tif, labels_tif[, win])
ltos_ratio_dis(labels_tifs)

spateo.segmentation.simulation_evaluation.add_sig_to_cell(labels, cell_mean_df, bg_mean_df, seed)

spateo.segmentation.simulation_evaluation.get_cell_pos(area_df, ltos, cell_num=100, height=500, width=500, seed=1, max_iter=20000, shift_length=100)

spateo.segmentation.simulation_evaluation.simulate_cell_and_sig(area_df, ltos, cell_sig_df, bg_sig_df, prefix, cell_num=100, height=500, width=500, seed=1, max_iter=20000, shift_length=100)

spateo.segmentation.simulation_evaluation.cal_ami(a1, a2)

spateo.segmentation.simulation_evaluation.cal_f1score(a1, a2, binary=True)

spateo.segmentation.simulation_evaluation.cal_precision(a1, a2, tau=0.5)

spateo.segmentation.simulation_evaluation.c_to_a_ratio_dis(labels_tif)

spateo.segmentation.simulation_evaluation.cell_area_dis(labels_tifs)

spateo.segmentation.simulation_evaluation.get_fb_dis(image_tif, labels_tif)

spateo.segmentation.simulation_evaluation.get_fb_dis_window(image_tif, labels_tif, win=200)

spateo.segmentation.simulation_evaluation.ltos_ratio_dis(labels_tifs)