Tutorials

This page provides links to handy step-by-step tutorials for key features of spateo. Click on any of the cards below to be taken to a Jupyter Notebook render of the specified tutorial. You may also view the original Jupyter Notebook by clicking on the link at the top of each tutorial.

Cell segmentation

Clustering and digitization

Cell-cell interaction

Alignment

Three dimensional reconstruction

Morphometric vector field and kinetics

Interactive tools

Spatially variable genes identificaion