spateo.tools.cluster_lasso¶

@File : cluster_lasso.py @Time : 2022/06/29 10:43:55 @Author : LuluZuo XueWang @Version : 1.0 @Desc : spatial cluster lasso

Classes¶

Lasso an region of interest (ROI) based on spatial cluster.

class spateo.tools.cluster_lasso.Lasso(adata)[source]¶

Lasso an region of interest (ROI) based on spatial cluster.

Examples

L = st.tl.Lasso(adata) L.vi_plot(group=’group’, group_color=’group_color’)

vi_plot(key='spatial', group: str | None = None, group_color: str | None = None)[source]¶

Plot spatial cluster result and lasso ROI.

Parameters:

key: The column key in .obsm, default to be ‘spatial’.
group: The column key/name that identifies the grouping information (for example, clusters that correspond to different cell types) of buckets.
group_color: The key in .uns, corresponds to a dictionary that map group names to group colors.

Returns:

subset of adata.

Return type:

sub_adata