spateo.tools.cluster_lasso#

@File : cluster_lasso.py @Time : 2022/06/29 10:43:55 @Author : LuluZuo XueWang @Version : 1.0 @Desc : spatial cluster lasso

Module Contents#

Classes#

Lasso

Lasso an region of interest (ROI) based on spatial cluster.

class spateo.tools.cluster_lasso.Lasso(adata)[source]#

Lasso an region of interest (ROI) based on spatial cluster.

Examples

L = st.tl.Lasso(adata) L.vi_plot(group=’group’, group_color=’group_color’)

__sub_inde = [][source]#
sub_adata[source]#
vi_plot(key='spatial', group: str | None = None, group_color: str | None = None)[source]#

Plot spatial cluster result and lasso ROI.

Parameters:
key

The column key in .obsm, default to be ‘spatial’.

group

The column key/name that identifies the grouping information (for example, clusters that correspond to different cell types) of buckets.

group_color

The key in .uns, corresponds to a dictionary that map group names to group colors.

Returns:

subset of adata.

Return type:

sub_adata