spateo.external.CAST.visualize

Functions

kmeans_plot_multiple(embed_dict_t, graph_list, coords, ...)

add_scale_bar(length_t, label_t)

plot_mid_v2(coords_q[, coords_r, output_path, ...])

plot_mid(coords_q, coords_r[, output_path, filename, ...])

link_plot(all_cosine_knn_inds_t, coords_q, coords_r, k)

dsplot(coords0, coords_plaque_t[, s_cell, s_plaque, ...])

Module Contents

spateo.external.CAST.visualize.kmeans_plot_multiple(embed_dict_t, graph_list, coords, taskname_t, output_path_t, k=20, dot_size=10, scale_bar_t=None, minibatch=True, plot_strategy='sep', axis_off=False)[source]
spateo.external.CAST.visualize.add_scale_bar(length_t, label_t)[source]
spateo.external.CAST.visualize.plot_mid_v2(coords_q, coords_r=None, output_path='', filename=None, title_t=['ref', 'query'], s_t=8, scale_bar_t=None)[source]
spateo.external.CAST.visualize.plot_mid(coords_q, coords_r, output_path='', filename=None, title_t=['ref', 'query'], s_t=8, scale_bar_t=None, axis_off=False)[source]
spateo.external.CAST.visualize.dsplot(coords0, coords_plaque_t, s_cell=10, s_plaque=40, col_cell='#999999', col_plaque='red', cmap_t='vlag', alpha=1, vmax_t=None, title=None, scale_bar_200=None, output_path_t=None, coords0_mask=None)[source]