`spateo.segmentation.simulation_evaluation.allocate_cell`#

Module Contents#

Classes#

Functions#

`get_cell_pos`(area_df, ltos[, cell_num, height, width, ...])
`shift_cells`(cells, labels, max_iter, seed[, shift_length])
`get_center`(height, width, cell_num, seed)
`select_area`(area_df, cell_num, seed)
`select_ctoa`(c_to_a_ratios, cell_num, seed)
`get_axes_from_area_and_ctoa`(areas, ctoas, seed)
`get_axes_from_area_and_ltos`(areas, ltos, seed)
`add_sig_to_cell`(labels, cell_mean_df, bg_mean_df, seed)
`simulate_cell_and_sig`(area_df, ltos, cell_sig_df, ...)

class spateo.segmentation.simulation_evaluation.allocate_cell.Cell(center, axes, color, angle)[source]#

set_center(center)[source]#

spateo.segmentation.simulation_evaluation.allocate_cell.get_cell_pos(area_df, ltos, cell_num=100, height=500, width=500, seed=1, max_iter=20000, shift_length=100)[source]#

spateo.segmentation.simulation_evaluation.allocate_cell.shift_cells(cells, labels, max_iter, seed, shift_length=10)[source]#

spateo.segmentation.simulation_evaluation.allocate_cell.get_center(height, width, cell_num, seed)[source]#

spateo.segmentation.simulation_evaluation.allocate_cell.select_area(area_df, cell_num, seed)[source]#

spateo.segmentation.simulation_evaluation.allocate_cell.select_ctoa(c_to_a_ratios, cell_num, seed)[source]#

spateo.segmentation.simulation_evaluation.allocate_cell.get_axes_from_area_and_ctoa(areas, ctoas, seed)[source]#

spateo.segmentation.simulation_evaluation.allocate_cell.get_axes_from_area_and_ltos(areas, ltos, seed)[source]#

spateo.segmentation.simulation_evaluation.allocate_cell.add_sig_to_cell(labels, cell_mean_df, bg_mean_df, seed)[source]#

spateo.segmentation.simulation_evaluation.allocate_cell.simulate_cell_and_sig(area_df, ltos, cell_sig_df, bg_sig_df, prefix, cell_num=100, height=500, width=500, seed=1, max_iter=20000, shift_length=100)[source]#