spateo.io.starmap#
IO functions for STARmap technology.
Module Contents#
Functions#
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Read STARmap data directory as AnnData. |
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Read STARmap cell positions npz as dataframe. |
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Read STARmap data as AnnData. |
- spateo.io.starmap.read_starmap_as_anndata(data_dir: str) anndata.AnnData[source]#
Read STARmap data directory as AnnData.
- Parameters:
- data_dir
Path to directory containing STARmap files.
- Returns:
AnnData of cell x genes.
- spateo.io.starmap.read_starmap_positions_as_dataframe(path: str) pandas.DataFrame[source]#
Read STARmap cell positions npz as dataframe.
- Parameters:
- path
Path to file
- Returns:
DataFrame containing cell positions.
- spateo.io.starmap.read_starmap(data_dir: str) anndata.AnnData[source]#
Read STARmap data as AnnData.
- Parameters:
- data_dir
Path to directory containing STARmap files.