spateo.tools.cluster._stagate¶
Module providing a encapsulation of pySTAGATE.
Classes¶
Class representing the object of pySTAGATE. |
Module Contents¶
- class spateo.tools.cluster._stagate.pySTAGATE(adata: anndata.AnnData, num_batch_x, num_batch_y, basis='spatial', spatial_key: list = ['X', 'Y'], batch_size: int = 1, rad_cutoff: int = 200, num_epoch: int = 1000, lr: float = 0.001, weight_decay: float = 0.0001, hidden_dims: list = [512, 30], device: str = 'cuda:0')[source]¶
Class representing the object of pySTAGATE.