spateo.segmentation.simulation_evaluation
=========================================

.. py:module:: spateo.segmentation.simulation_evaluation


Submodules
----------

.. toctree::
   :maxdepth: 1

   /autoapi/spateo/segmentation/simulation_evaluation/allocate_cell/index
   /autoapi/spateo/segmentation/simulation_evaluation/evaluation/index
   /autoapi/spateo/segmentation/simulation_evaluation/prepare/index


Functions
---------

.. autoapisummary::

   spateo.segmentation.simulation_evaluation.add_sig_to_cell
   spateo.segmentation.simulation_evaluation.get_cell_pos
   spateo.segmentation.simulation_evaluation.simulate_cell_and_sig
   spateo.segmentation.simulation_evaluation.cal_ami
   spateo.segmentation.simulation_evaluation.cal_f1score
   spateo.segmentation.simulation_evaluation.cal_precision
   spateo.segmentation.simulation_evaluation.c_to_a_ratio_dis
   spateo.segmentation.simulation_evaluation.cell_area_dis
   spateo.segmentation.simulation_evaluation.get_fb_dis
   spateo.segmentation.simulation_evaluation.get_fb_dis_window
   spateo.segmentation.simulation_evaluation.ltos_ratio_dis


Package Contents
----------------

.. py:function:: add_sig_to_cell(labels, cell_mean_df, bg_mean_df, seed)

.. py:function:: get_cell_pos(area_df, ltos, cell_num=100, height=500, width=500, seed=1, max_iter=20000, shift_length=100)

.. py:function:: simulate_cell_and_sig(area_df, ltos, cell_sig_df, bg_sig_df, prefix, cell_num=100, height=500, width=500, seed=1, max_iter=20000, shift_length=100)

.. py:function:: cal_ami(a1, a2)

.. py:function:: cal_f1score(a1, a2, binary=True)

.. py:function:: cal_precision(a1, a2, tau=0.5)

.. py:function:: c_to_a_ratio_dis(labels_tif)

.. py:function:: cell_area_dis(labels_tifs)

.. py:function:: get_fb_dis(image_tif, labels_tif)

.. py:function:: get_fb_dis_window(image_tif, labels_tif, win=200)

.. py:function:: ltos_ratio_dis(labels_tifs)