spateo.io.starmap
=================

.. py:module:: spateo.io.starmap

.. autoapi-nested-parse::

   IO functions for STARmap technology.



Functions
---------

.. autoapisummary::

   spateo.io.starmap.read_starmap_as_anndata
   spateo.io.starmap.read_starmap_positions_as_dataframe
   spateo.io.starmap.read_starmap


Module Contents
---------------

.. py:function:: read_starmap_as_anndata(data_dir: str) -> anndata.AnnData

   Read STARmap data directory as AnnData.

   :param data_dir: Path to directory containing STARmap files.

   :returns: AnnData of cell x genes.


.. py:function:: read_starmap_positions_as_dataframe(path: str) -> pandas.DataFrame

   Read STARmap cell positions npz as dataframe.

   :param path: Path to file

   :returns: DataFrame containing cell positions.


.. py:function:: read_starmap(data_dir: str) -> anndata.AnnData

   Read STARmap data as AnnData.

   :param data_dir: Path to directory containing STARmap files.