{ "cells": [ { "cell_type": "markdown", "id": "6cb24ccd-aa3d-4cc0-aa07-5144f31b7072", "metadata": {}, "source": [ "# Stain segmentation\n", "\n", "In this tutorial, we assume we have paired RNA and nuclei staining image for the same tissue slice, and that the two coordinate systems are (roughly) registered. We will use the nuclei staining as the ground-truth location of the nuclei and use this information to obtain cell segmentation. We will do so in the following steps.\n", "\n", "