spateo.utils
============

.. py:module:: spateo.utils


Functions
---------

.. autoapisummary::

   spateo.utils.copy_adata
   spateo.utils.remove_kwargs


Module Contents
---------------

.. py:function:: copy_adata(adata: anndata.AnnData) -> anndata.AnnData

   wrapper for deep copy adata and log copy operation since it is memory intensive.

   :param adata: An adata object that will be deep copied.
   :param logger: Whether to report logging info

   .. rubric:: Examples

   >>> import dynamo as dyn
   >>> adata = dyn.sample_data.hgForebrainGlutamatergic()
   >>> original_adata = copy_adata(adata)
   >>> # now after this statement, adata "points" to a new object, copy of the original
   >>> adata = copy_adata(adata)
   >>> adata.X[0, 1] = -999
   >>> # original_adata unchanged
   >>> print(original_adata.X[0, 1])
   >>> # we can use adata = copy_adata(adata) inside a dynammo function when we want to create a adata copy
   >>> # without worrying about changing the original copy.


.. py:function:: remove_kwargs(my_dict, keys)