spateo
#
Spatiotemporal modeling of spatial transcriptomics
Subpackages#
spateo.alignment
spateo.digitization
spateo.external
spateo.io
spateo.plotting
spateo.plotting.interactive
spateo.plotting.static
spateo.plotting.static.three_d_plot
spateo.plotting.static.agg
spateo.plotting.static.align
spateo.plotting.static.bbs
spateo.plotting.static.colorlabel
spateo.plotting.static.dotplot
spateo.plotting.static.geo
spateo.plotting.static.glm
spateo.plotting.static.interactions
spateo.plotting.static.lisa
spateo.plotting.static.networks
spateo.plotting.static.polarity
spateo.plotting.static.position
spateo.plotting.static.scatters
spateo.plotting.static.space
spateo.plotting.static.utils
spateo.preprocessing
spateo.segmentation
spateo.segmentation.external
spateo.segmentation.simulation_evaluation
spateo.segmentation.align
spateo.segmentation.benchmark
spateo.segmentation.bp
spateo.segmentation.density
spateo.segmentation.em
spateo.segmentation.icell
spateo.segmentation.label
spateo.segmentation.moran
spateo.segmentation.qc
spateo.segmentation.simulation
spateo.segmentation.utils
spateo.segmentation.vi
spateo.svg
spateo.tdr
spateo.tdr.interpolations
spateo.tdr.interpolations.interpolation_deeplearn
spateo.tdr.interpolations.interpolation_gaussianprocess
spateo.tdr.interpolations.interpolation_dl
spateo.tdr.interpolations.interpolation_gp
spateo.tdr.interpolations.interpolation_sparseVFC
spateo.tdr.interpolations.interpolation_vtk
spateo.tdr.interpolations.utils
spateo.tdr.models
spateo.tdr.morphometrics
spateo.tdr.widgets
spateo.tools
spateo.tools.CCI_effects_modeling
spateo.tools.cluster
spateo.tools.architype
spateo.tools.cci_fdr
spateo.tools.cci_two_cluster
spateo.tools.cell_communication
spateo.tools.cluster_degs
spateo.tools.cluster_lasso
spateo.tools.coarse_align
spateo.tools.dimensionality_reduction
spateo.tools.find_neighbors
spateo.tools.gene_expression_variance
spateo.tools.glm
spateo.tools.labels
spateo.tools.lisa
spateo.tools.live_wire
spateo.tools.roi
spateo.tools.spatial_degs
spateo.tools.spatial_smooth
spateo.tools.spatially_variable_gene_ot
spateo.tools.utils
Submodules#
Package Contents#
Functions#
A minimalistic version helper in the spirit of versioneer, that is able to run without build step using pkg_resources. |
Attributes#
- spateo.get_version(package: pathlib.Path | str) str #
Get the version of a package or module Pass a module path or package name. The former is recommended, since it also works for not yet installed packages. Supports getting the version from #. The directory name (as created by
setup.py sdist
) #. The output ofgit describe
#. The package metadata of an installed package(This is the only possibility when passing a name)
- Parameters:
- package
package name or module path (
…/module.py
or…/module/__init__.py
)